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celfie

cfDNA cell type of origin estimation

chm13

The complete sequence of a human genome

clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

cwdtw

Continuous Wavelet Dynamic Time Warping for unbalanced global mapping of two signals

deepsimulator

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

detin

DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

dnamethyage

Predict epigenetic age from DNA methylation data

dockstore_tool_varscan_cnv

Varscan copynumber variation caller workflow

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

igv-snapshot-automator

Script to automatically create and run IGV snapshot batchscripts

kindle_download_helper

Download all your kindle books script.

longreadbenchmark

Benchmarking long-read RNA-seq analysis tools

maeci

MAECI: A Tool For Integrating Multiple Assemblies Into A Consensus Sequence Base On Nanopore Sequencing Data

metabolomicsr

Tools for metabolomic data

mimosa

Model-based Integration of Metabolite Observations and Species Abundances

monod2

MONOD2 is a toolkit for methylation haplotype analysis of bisulfite sequencing data

mr-jti

na12878

Data and analysis for NA12878 genome on nanopore

nano2ngs

Nano2NGS: A framework for converting long-read sequencing data into NGS-liked mode for targeted mutation and metagenomic data analysis

nanocov19

NanoCoV19: An Analytical Pipeline for Rapid Detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2)

nanohla

A method for typing human leukocyte antigen class I genes based on nanopore sequencing

nanopore_simulation

Nanopore SimulatION is a tool for simulating an Oxfornd Nanopore Technologies MinION device for bioinformatic development.

nanostr

A method for detecting targeted STR typing based on nanopore sequencing data

ont-nanopore-kmer_models

Predictive kmer models for development use

ont_fast5_api

Oxford Nanopore Technologies fast5 API software

open-data-registry

A registry of publicly available datasets on AWS

pc-clocks

Code for the calculation and implementation of the PC Based epigenetic clocks

platinumgenomes

The Platinum Genomes Truthset

primalscheme

a tool for designing primer panels for multiplex PCR.

pubmed_parser

:clipboard: A Python Parser for PubMed Open-Access XML Subset and MEDLINE XML Dataset