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champ

circexplorer2

circular RNA analysis toolset

combined-pvalues

combining p-values using modified stouffer-liptak for spatially correlated results (probes)

comseg

comseg

cramisc

Personal R functions for data analysis

cruzdb-1

python access to UCSC genomes database

expecto

flowsorted.blood.epic

This package includes a new cell reference for adult peripheral blood deconvolution arrayed using Illumina HumanMethylationEPIC

geodiff

GeoDiff, an R package for count generating models for analyzing Geomx RNA data. Note that this version of the package is still under development, undergoing submission process to Bioconductor 3.14 release and still needs to complete NanoString internal verification process.

geomxtools

Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.

lmms

:exclamation: This is a read-only mirror of the CRAN R package repository. lmms — Linear Mixed Effect Model Splines for Modelling and Analysis of Time Course Data

methylstar

METHYLSTAR Project

omixer

pathfindr

pathfindR: Enrichment Analysis Utilizing Active Subnetworks

pcatools

PCAtools: everything Principal Components Analysis

rrho2

spatialomicsoverlay

Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).

standr

Spatial transcriptomics analyses and decoding in R