lasigebiotm Goto Github PK

bent

Biomedical Term Annotator

bioasq9b

LASIGE ULisboa Team work at BioASQ9B

biocreativevii

lasigeBioTM at BioCreative VII Track 1: Text mining drug and chemical-protein interactions using biomedical ontologies

biocreativeviii_track1

biomedical_workshop_bod

Repository with code and data used on the Biomedical Text Mining workshop at Bioinformatics Open Days 2017

biont

BiOnt: Deep Learning using Multiple Biomedical Ontologies for Relation Extraction

biqa

Generating Scientific Question Answering Corpora from Q&A forums

blah6

Annotation of Human Phenotype-Gene Relations - Improving Accessibility and Distinction between Negative Results in Biomedical Relation Extraction

blah7

Annotating a multilingual COVID-19-related corpus

blir

Biomarker Literature Retrieval

boe

BOE: BiOnt Enhanced for Relation Extraction in Gene and Chemical Compounds interactions (DrugProt corpus)

bolstm

Classifying Relations via Long Short-Term Memory Networks along Biomedical Ontologies

cantemist-participation

Code relative to the participation of the lasigeBioTM team in the CANTEMIST-CANcer TExt Mining Shared Task – tumor named entity recognition.

carm

create Astro Ratings Matrix

chemrecsys

cherm

Chemical Compounds Recommender Matrix

cita

Clinical Timeline Annotation (CiTA)

dishin

Semantic Similarity Measures using Disjunctive Shared Information

drecpy

Deep Recommenders with Python: A Python library for building Deep Learning based Recommender Systems

evalrecsys

Evaluating Recommender Systems

exposome_ner_nel

funvar

A Systematic Pipeline to Unravel the Convergence Patterns of Genetic Variants in Complex Diseases

hpo_crowd_annotation_experiment

ibent

Identifying Biomedical Entities

ibrel

Identifying Biomedical Relations

icerl_system-icr_corpus

ICERL system: Iberian Cancer-related Entity Recognition and Linking system ICR corpus: Iberian Cancer-related corpus

icrel

Identifying Cellular Relations

ihp

Identification of Human Phenotype Entities

jaccardsimilarity

Calculate the Jaccard Similarity Coefficient between two sets of terms based on their ancestors in an OBO ontology

k-biont

Biomedical Relation Extraction with Knowledge Graph-based Recommendations