Comments (4)
@fedorov The TotalSegmentator v2 mapping is almost complete, just two labels are missed (see above). Could you add their mapping to the .csv file? Thank you! If it is done then it could make sense to submit the .csv to the TotalSegmentator repository, too.
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I don't think there are fixed label values (each task uses different label values). You can find find S1 here: https://github.com/wasserth/TotalSegmentator/blob/cad2230bc2756c555b13afa5282019d1c87b7a5a/totalsegmentator/map_to_binary.py#L138 the other one is in the same file.
We can probably remove the label numbers from the .csv but you can ask Jakob to confirm.
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If it is done then it could make sense to submit the .csv to the TotalSegmentator repository, too.
I agree. I will do it once it is updated here first.
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@lassoan can you please let me know what are the label numbers for those 2 missing labels, and where they are located in TotalSegmentator repo? I tried and failed in looking for those.
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Related Issues (20)
- Distance between slices HOT 2
- Telemetry details sent by default when using latest TotalSegmentor HOT 1
- TotalSegmentator exits with code 2 HOT 2
- Force reinstall fail... HOT 1
- Print more meaningful message if package information is requested before installing TotalSegmentator
- SimpleITK problem is still present when using lungmask HOT 9
- Old UI present when used with 3D Slicer 5.4.0 HOT 3
- Feature request: Add a backend support e.g. GPU on different machine. HOT 2
- TotalSegmentator fails to launch on Windows with Slicer 5.4 HOT 1
- TotalSegmentator.exe': [Errno 2] No such file or directory HOT 5
- GPU not found HOT 5
- Failed compute to results
- Consider updating mapping CSV file to include segment colors HOT 6
- Feature Request: Segment all volumes in a sequence HOT 1
- Fix incompatibility issue of latest dynamic_network_architectures HOT 1
- Howto import the segmented `.nii` file into the scene of 'slicer' through code? HOT 3
- Feature request: a checked box 'import labelMapVolume' HOT 1
- Installation on MacBook M2
- How can I convert stl to nii, and has the same shape with original image? HOT 1
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