Laura Luebbert, Ph.D.'s Projects
Introduction to Computational Biology and Bioinformatics Course at Caltech, 2023
Conda recipes for the bioconda channel.
Tools for working with BUS files
CZ CELLxGENE Discover Census
Imaging experiments in Biology often involve the acquisition of confocal z-stack images to quantify fluorescent signal in a biological sample. These z-stacks are usually analyzed using open-source programs such as FIJI, which are notoriously frustrating to work with, and do not facility intuitive high-throughput analysis of many images at once. Manual image analysis is labor-intensive, time-consuming, and prone to human error. I compiled two notebooks to streamline two of the most commonly performed tasks in the analysis of confocal z-stack images: the generation of "pretty" maximum projections, and the analysis of pixel values/ fluorescence from sum projections.
:pencil2: A versatile DNA sequence optimizer
grubClub PCB, arena STL, and component list
Near-optimal RNA-Seq quantification
Code to reproduce all figures included in my Ph.D. thesis not previously published in papers.
Notebook to analyze ThorImage + ThorSync 2-photon data with light stimulation.
Automatically generates plots showing the number of studies using transcriptomics technologies over time.