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apoc

blog

Most of us study and work at the Bio-image Analysis Technology Development group at the DFG Cluster of Excellence “Physics of Life” at the TU Dresden. We blog about image data science, knowledge exchange and research data management in the life sciences.

devbio-napari

diffae

Official implementation of Diffusion Autoencoders

end2end-wsi-preprocessing

End-to-end pipeline to go from raw H&E slides to normalised extracted features for training

napari-accelerated-pixel-and-object-classification

GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.

napari-clusters-plotter

A plugin to use with napari for clustering objects according to their properties.

napari-clusters-plotter-example-notebooks

This repository hosts jupyter notebooks with examples of napari-clusters-plotter usage

napari-layer-details-display

napari-segment-blobs-and-things-with-membranes

A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/or membranes.

napari-skimage-regionprops

Feature extraction for labeled objects in images using regionprops from scikit-image

organoid-segmentation-ml

Supplementary Material for the master thesis on segmentation of early mESC organoid 3D+time data with fluorescently labelled membranes

stardist

StarDist - Object Detection with Star-convex Shapes

stardist-napari

StarDist plugin for napari