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applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

armor

Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data

bacass

Simple bacterial assembly and annotation pipeline

binf-unit-coding-challenge

Extract and translate nucleotide sequences into amino acid sequences

biopieces

Biopieces is a bioinformatic framework of tools easily used and easily created.

biopython_lbo

Official git repository for Biopython (originally converted from CVS)

bookdown-start

:book: A Starter Kit for Bookdown

bugseq-pipeline

Bugseq Pipeline

coilerr.github.io

My githubpage

coursera_data_exploration

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cv

Paula Restrepo's resume/CV

data-science-career

Career Resources for Data Science, Machine Learning, Big Data and Business Analytics Career Repository

docx2tex

Converts Microsoft Word docx to LaTeX

exdata_plotting1

Plotting Assignment 1 for Exploratory Data Analysis

ifnsorted_flu_single_cell

single-cell sequencing of flu infected cells enriched for IFN+ ones

latexcv

:necktie: A collection of cv and resume templates written in LaTeX. Leave an issue if your language is not supported!

lathe

A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing

lbo_unixworkbench

repository for the assignment coursera

marimo

A reactive notebook for Python — run reproducible experiments, execute as a script, deploy as an app, and version with git.

markdown-cv

a simple template to write your CV in a readable markdown file and use CSS to publish/print it.

marti

Metagenomic Analysis in Real Time

metapep

From metagenomes to epitopes and beyond

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

mosdepth

fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing

mygitrepo

this was created in the context of a coursera course

nextprot-collab

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

prrsv

python

All Algorithms implemented in Python