Comments (1)
lcolladotor
commented on August 30, 2024
Hi Steve,
If you use download_study('all', type = 'rse-gene') or download_study('all', type = 'rse-exon') you can get the matrices for all of the SRA projects. With a bit of work, you can append the GTEx and TCGA data to get the matrices for over 70k samples. Then use those matrices along with scale_counts() for the project you describe.
At the exon-exon junction level you would have to download the files for each study, decide how to filter and then merge them (otherwise it gets very large very fast).
Best,
Leonardo
from recount.
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from recount.