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adjol

outlier adjustment for RNAseq data

allez

Random-set calibration of gene-set statistics

eaci

ebseq

EBSeq: An R package for RNA-Seq Differential Expression Analysis

ebseqhmm

EBSeq-HMM: A Bayesian approach for identifying expression changes in ordered RNA-seq experiments

ebseqhmm-1

This is a read-only mirror of the Bioconductor SVN repository. Package Homepage: http://bioconductor.org/packages/devel/bioc/html/EBSeqHMM.html Bug Reports: https://support.bioconductor.org/p/new/post/?tag_val=EBSeqHMM.

enrich_shiny

R/shiny app for enrichment analysis

enrichment-test

Enrichment test based on PCA loadings

fet

Fisher's exact test wrapper

gclinbiomarker

gclinbiomarker-templates

Rmarkdown templates for gClinBiomarker

heatmap-wrapper

knitr-examples

a collection of knitr examples

lengning.github.io

multimod

Identify genes with multiple modes

mv

Select genes with high mean high variance

normalization

Median-by-ratio normalization of RNAseq data

oefinder

Identify ordering effect genes in single cell RNA-seq data

pca-wrapper

rochedevtools

Tools to make an R developer's life easier

rsem

RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

scpattern

Identify and characterize expression changes in a single cell RNA-seq experiment with ordered conditions

segreg

SegReg: Breakpoint analysis of time course expression data

segvis

Package to calculate the histone coverage of a set of genomic regions given a ChIP - Seq experiment

soxtc_plot1

Internal plotting interface for sox2 tc data

translatable_paper

wavecrest