Comments (5)
In GitLab by @lentendu on Feb 16, 2018, 13:27
mentioned in commit 8bf51ae
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In GitLab by @lentendu on Feb 16, 2018, 14:16
mentioned in merge request !1
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In GitLab by @lentendu on May 22, 2018, 08:48
closed via commit 8bf51ae
from deltamp.
In GitLab by @lentendu on May 22, 2018, 08:48
mentioned in commit f25b905
from deltamp.
In GitLab by @lentendu on May 22, 2018, 08:48
closed via merge request !1
from deltamp.
Related Issues (20)
- Adapt raw stat R scripts to R 4
- Avoid error if all reads already used in one direction for bidirectionnal libraries
- Allow different set of parameters for checkpointing
- Add header option to mimato
- Add NGmerge as alternative pair-end algorithm
- Allow disabling DADA2 bimera removal HOT 1
- Problem with restart from step when cut_db in the steps
- Problem with cutadapt and anchored adapters
- Feature: similarity based clustering for pair-end sequences which cannot be assembled
- Feature: provide manually curated reference sequences to use for taxonomic identification
- More systematic compression at all levels
- Change minimum number of rank depending on database for cut_db
- Issue with ASV and swarm clustering not accepting N's
- Add version and commit number in env for backward compatibility
- Cluster with multiple previous sub-projects
- Force analyses for unpairable datasets
- Accept gz compress database fasta files
- Set a minimum amount of raw reads found in one orientation to consider this orientation
- Force all samples to belong to the same run for ASV error modl building
- Feature: allow to re-use same optimize quality parameters than a previous subproject
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