Comments (6)
lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 24, 2018, 16:16
changed the description
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 25, 2018, 11:32
added ~3497721 label
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 29, 2018, 18:38
mentioned in commit 70e690f5d16652490993590e4825653402db3be4
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 29, 2018, 18:41
mentioned in commit 5e2db6d97907eb83f32e7b478d71eca433357d1a
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 15:43
mentioned in commit c072c57
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on Jun 12, 2018, 10:11
mentioned in commit 399d409
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Related Issues (20)
- Adapt raw stat R scripts to R 4
- Avoid error if all reads already used in one direction for bidirectionnal libraries
- Allow different set of parameters for checkpointing
- Add header option to mimato
- Add NGmerge as alternative pair-end algorithm
- Allow disabling DADA2 bimera removal HOT 1
- Problem with restart from step when cut_db in the steps
- Problem with cutadapt and anchored adapters
- Feature: similarity based clustering for pair-end sequences which cannot be assembled
- Feature: provide manually curated reference sequences to use for taxonomic identification
- More systematic compression at all levels
- Change minimum number of rank depending on database for cut_db
- Issue with ASV and swarm clustering not accepting N's
- Add version and commit number in env for backward compatibility
- Cluster with multiple previous sub-projects
- Force analyses for unpairable datasets
- Accept gz compress database fasta files
- Set a minimum amount of raw reads found in one orientation to consider this orientation
- Force all samples to belong to the same run for ASV error modl building
- Feature: allow to re-use same optimize quality parameters than a previous subproject
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