Comments (8)
lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 14:08
mentioned in commit 2fa8a7e74f8b6cf28ff6046c90097dfe6fbef058
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 14:38
mentioned in commit 196ef5ddfd0ca375e5a370f30762e94ecb70c9cb
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 14:46
mentioned in commit 1e80eec81174e796376dd47a5aa2dffe347ec1cb
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 15:36
mentioned in commit 7f635b2ffe59b002256056f046411d5fc0165caf
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 15:43
mentioned in commit 518afbb
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on May 30, 2018, 15:43
mentioned in commit 95ad807
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lentendu
commented on July 21, 2024
In GitLab by @lentendu on Sep 19, 2018, 17:46
removed milestone
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lentendu
commented on July 21, 2024
No need for more automatic set of memory request, this should be handle by high memory job in the config file
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Related Issues (20)
- Adapt raw stat R scripts to R 4
- Avoid error if all reads already used in one direction for bidirectionnal libraries
- Allow different set of parameters for checkpointing
- Add header option to mimato
- Add NGmerge as alternative pair-end algorithm
- Allow disabling DADA2 bimera removal HOT 1
- Problem with restart from step when cut_db in the steps
- Problem with cutadapt and anchored adapters
- Feature: similarity based clustering for pair-end sequences which cannot be assembled
- Feature: provide manually curated reference sequences to use for taxonomic identification
- More systematic compression at all levels
- Change minimum number of rank depending on database for cut_db
- Issue with ASV and swarm clustering not accepting N's
- Add version and commit number in env for backward compatibility
- Cluster with multiple previous sub-projects
- Force analyses for unpairable datasets
- Accept gz compress database fasta files
- Set a minimum amount of raw reads found in one orientation to consider this orientation
- Force all samples to belong to the same run for ASV error modl building
- Feature: allow to re-use same optimize quality parameters than a previous subproject
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