Related Issues (20)
- Change OTU matrix cleaning order
- Fix Slurm job names
- Null model 1 transpose the randomize matrix
- Option -m not correctly set in case
- Add an option to control the threshold of percent total OTUs included in the largest connected component from randomly permuted matrices
- Add SLURM partition name option -p
- Any possibilities to support qsub? HOT 4
- Add clr transformation
- Avoid nodelist option for non-array jobs
- Allow fine tuning of memory and CPU request
- OTU Table Read Abundance vs. Present/Absent Data HOT 6
- hdf5r vs. rhdf5 HOT 1
- graph.data.frame() was deprecated in igraph 2.0.0.
- -m columns option not working, Error in match.arg HOT 1
- choosing null model using options from permatful in vegan HOT 1
- Include the median correlation value as third column in the edge list outputs
- Adapt requested time and memory to data size for threshold, edges and network steps
- Avoid error if co-occurrence or co-exclusion network are empty, just report HOT 1
- Add an option to select the type of OTU matrix normalization
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