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amygda

Automated Mycobacterial Growth Detection Algorithm, funded by NIHR Oxford Biomedical Research Centre

awesome-cpp

A curated list of awesome C++ (or C) frameworks, libraries, resources, and shiny things. Inspired by awesome-... stuff.

bacterial_assembly_pipeline

bioconda-recipes

Conda recipes for the bioconda channel.

boom

A hash map using the BooPHF perfect hash function

cap

Implementation of the algorithm to solve the Chain Alignment Problem (CAP) and the three heuristics for the Multiple Chain Alignment Problem (MCAP) in C

cobs

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

cppcoreguidelines

The C++ Core Guidelines are a set of tried-and-true guidelines, rules, and best practices about coding in C++

cytoscape_on_cluster

cyvcf2

cython + htslib == fast VCF and BCF processing

dbgwas

Github (trivial) mirror for https://gitlab.com/leoisl/dbgwas

docker_recipes

easy_bwast

Command line BLAST made-easy

erable_menu_script

eyta

gatb-core

Core library of the Genome Analysis Toolbox with de-Bruijn graph

gcp

Genotype confidence percentile header-only c++ implementation

gemma0.93b

Modified copy of GEMMA version 0.93 (Zhou and Stephens) for use with bugs

gramtools

Genome inference from a population reference graph

grp_meeting

grp_meeting_test

head_to_head_pipeline

Snakemake pipeline to run analysis for the Illumina vs. Nanopore comparison.

hello-mess-nf

A Nextflow pipeline to experiment with DSL2 + Zero Mess

igv-reports

Python application to generate self-contained pages embedding IGV visualizations, with no dependency on original input files.

libarchive

Multi-format archive and compression library

lr_ec_analyser

Github mirror for https://gitlab.com/leoisl/LR_EC_analyser

make_prg

Code to create a PRG from a Multiple Sequence Alignment file

minimap2

A versatile pairwise aligner for genomic and spliced nucleotide sequences

miniphy-cobs

mobmess