Comments (3)
You might prefer to save these vectors as new objects. Then others can access them if needed. Aka, usethis::use_data_raw()
and usethis::use_data()
.
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Expand the description
and/or details
such that it explains really well what are each of the sets and why you would want to use one over the other in some situations. We'll probably use that same text (or shorten it) on the vignette and the paper.
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On the vignette we could use https://cran.r-project.org/package=UpSetR to show a venn diagram of the different transcript sets. Since you have 4 sets in mind, we could use VennDiagram
instead if you prefer.
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Related Issues (20)
- Figure 3
- Figure 4
- Figure 5
- [BUG] Document when users need to specify set.seed() to ensure reproducibility of their results
- [BUG] Complete qSVA() wrapper HOT 2
- qsvaR workflow overview image
- Add a guide highlighting differences vs the qSVA 2017 method published in PNAS
- Provide access to all statistical model results
- Enhance flexibility of transcript selection
- Expand functionality for downstream analyses
- Guide for downstream analyses
- Helper functions for reproducing statistical modeling results that can be applied to subsets of the available data or new degradation datasets
- Guide for using helper functions to select transcripts associated with degradation in new subsets or new datasets
- Design a 2 day workshop / short course
- Translate course and intro documentation to Spanish
- Video guides for qsvaR
- Interactive tool for assessing confounding of DE results with RNA degradation
- Guide for evaluating confounding of DE results with RNA degradation
- Switch to using rlang and cli
- [Feature Request] Support ENSEMBL IDs HOT 2
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