Errors on installation about ssm HOT 3 CLOSED

Hi Andrew,

I'm not sure what's going on here. It looks like the Travis builds are working on Linux. For comparison, here is the relevant section of the Travis output:

    gcc -pthread -B /home/travis/miniconda/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/travis/miniconda/lib/python3.6/site-packages/numpy/core/include -I/home/travis/miniconda/include/python3.6m -I/home/travis/miniconda/include/python3.6m -c ssm/messages.cpp -o build/temp.linux-x86_64-3.6/ssm/messages.o -O3
    cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
    In file included from /home/travis/miniconda/lib/python3.6/site-packages/numpy/core/include/numpy/ndarraytypes.h:1830:0,
                     from /home/travis/miniconda/lib/python3.6/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
                     from /home/travis/miniconda/lib/python3.6/site-packages/numpy/core/include/numpy/arrayobject.h:4,
                     from ssm/messages.cpp:629:
    /home/travis/miniconda/lib/python3.6/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
     #warning "Using deprecated NumPy API, disable it with " \
      ^
    creating build/lib.linux-x86_64-3.6
    creating build/lib.linux-x86_64-3.6/ssm
    g++ -pthread -shared -B /home/travis/miniconda/compiler_compat -L/home/travis/miniconda/lib -Wl,-rpath=/home/travis/miniconda/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.6/ssm/messages.o -o build/lib.linux-x86_64-3.6/ssm/messages.cpython-36m-x86_64-linux-gnu.so

It looks pretty similar to me... I wonder if it's a problem with your gcc/g++ config? Perhaps you could try installing from the ssm directory with pip install -v -e . and see if it shows any more information?

from ssm.

I'm going to close this issue as it doesn't seem to have been reproduced by others. Please reopen if you continue to run into trouble!

from ssm.

Hi @slinderman
apologies i am getting errors on the install

Requirement already satisfied: six in /home/andrewcz/miniconda3/envs/myenv1/lib/python3.7/site-packages (from cycler>=0.10->matplotlib->ssm==0.0.1) (1.12.0)
Installing collected packages: ssm
Running setup.py develop for ssm
ERROR: Complete output from command /home/andrewcz/miniconda3/envs/myenv1/bin/python -c 'import setuptools, tokenize;file='"'"'/home/andrewcz/ssm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' develop --no-deps:
ERROR: USE_OPENMP False
running develop
running egg_info
writing ssm.egg-info/PKG-INFO
writing dependency_links to ssm.egg-info/dependency_links.txt
writing requirements to ssm.egg-info/requires.txt
writing top-level names to ssm.egg-info/top_level.txt
reading manifest file 'ssm.egg-info/SOURCES.txt'
writing manifest file 'ssm.egg-info/SOURCES.txt'
running build_ext
building 'ssm.messages' extension
gcc -pthread -B /home/andrewcz/miniconda3/envs/myenv1/compiler_compat -Wl,--sysroot=/ -Wsign-compare -DNDEBUG -g -fwrapv -O3 -Wall -Wstrict-prototypes -fPIC -I/home/andrewcz/.local/lib/python3.7/site-packages/numpy/core/include -I/home/andrewcz/miniconda3/envs/myenv1/include/python3.7m -I/home/andrewcz/miniconda3/envs/myenv1/include/python3.7m -c ssm/messages.cpp -o build/temp.linux-x86_64-3.7/ssm/messages.o -O3
cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++
In file included from /home/andrewcz/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822,
from /home/andrewcz/.local/lib/python3.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12,
from /home/andrewcz/.local/lib/python3.7/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from ssm/messages.cpp:629:
/home/andrewcz/.local/lib/python3.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with "
| ^~~~~~~
g++ -pthread -shared -B /home/andrewcz/miniconda3/envs/myenv1/compiler_compat -L/home/andrewcz/miniconda3/envs/myenv1/lib -Wl,-rpath=/home/andrewcz/miniconda3/envs/myenv1/lib -Wl,--no-as-needed -Wl,--sysroot=/ build/temp.linux-x86_64-3.7/ssm/messages.o -o build/lib.linux-x86_64-3.7/ssm/messages.cpython-37m-x86_64-linux-gnu.so
/home/andrewcz/miniconda3/envs/myenv1/compiler_compat/ld: build/temp.linux-x86_64-3.7/ssm/messages.o: unable to initialize decompress status for section .debug_info
/home/andrewcz/miniconda3/envs/myenv1/compiler_compat/ld: build/temp.linux-x86_64-3.7/ssm/messages.o: unable to initialize decompress status for section .debug_info
/home/andrewcz/miniconda3/envs/myenv1/compiler_compat/ld: build/temp.linux-x86_64-3.7/ssm/messages.o: unable to initialize decompress status for section .debug_info
/home/andrewcz/miniconda3/envs/myenv1/compiler_compat/ld: build/temp.linux-x86_64-3.7/ssm/messages.o: unable to initialize decompress status for section .debug_info
build/temp.linux-x86_64-3.7/ssm/messages.o: file not recognized: file format not recognized
collect2: error: ld returned 1 exit status
error: command 'g++' failed with exit status 1

ERROR: Command "/home/andrewcz/miniconda3/envs/myenv1/bin/python -c 'import setuptools, tokenize;file='"'"'/home/andrewcz/ssm/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(file);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, file, '"'"'exec'"'"'))' develop --no-deps" failed with error code 1 in /home/andrewcz/ssm/

For me I have the same issue but followed by this issue I have solved it.

I do
export CC=$(which gcc-9)
export CXX=$(which g++-9)

from ssm.