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.tmux

🇫🇷 Oh My Tmux! Pretty & versatile tmux configuration / customization made with ❤️

2020-ngsinfectedbodyfluids

scripts and data for Gu et al Nature Medicine 2020 manuscript

7-zip-zstd

7-Zip with support for Brotli, Fast-LZMA2, Lizard, LZ4, LZ5 and Zstandard

abf-sdk

Resources for working with Axon Binary Format (ABF) Files

abpoa

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

abra

Assembly Based ReAligner

abra2

ABRA2

adamajava

admixtools

Tools test whether admixture occurred and more

aect

A deep learning based pipeline for TSS coverage denoising and feature extraction from shallow cell free DNA sequencing

align

Performs global and local sequence alignment.

api-example-django

An example API client using Python and Django, that pulls in data from SNPedia.

auto-pairs

Vim plugin, insert or delete brackets, parens, quotes in pair

awesome-nanopore

A curated list of awesome nanopore analysis tools.

bam-readcount

count DNA sequence reads in BAM files

bam_realigner

SeqAn-Based Relaignment of BAM files.

bamalignmentviewer

A program for plot the reads covered target position for BAM sequence alignment

bamsurgeon

tools for adding mutations to existing .bam files, used for testing mutation callers

bamtools

C++ API & command-line toolkit for working with BAM data

bcbio-nextgen

Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis

benchmark

Bioinformatics scripts

bernoulli-mixture-model

A simple implementation of the Bernoulli Mixture Model (BMM) to perform clustering of documents.

bin

some perl, lua scripts.

bis-tools

A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clustering: alignWigToBed; )

bonito

A PyTorch Basecaller for Oxford Nanopore Reads

breakdancer

SV detection from paired end reads mapping

bs-snper

bs_call

DNA methylation and variant Caller for Bisulfite Sequencing Data.

bwa-mem2

The next version of bwa-mem (WIP; not recommended for production uses at the moment)

bwa-meth

fast and accurate alignment of BS-Seq reads using bwa-mem and a 3-letter genome