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lmdu avatar lmdu commented on June 14, 2024

Could you send me your code, system information and python environment. I have run pyfastx on Windows, CentOS and Ubuntu, it works fine.

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cmorganl avatar cmorganl commented on June 14, 2024

OS: Ubuntu 16.04 and 18.04
Python: 3.7.3

I found it was actually able to parse some fasta files but not all and I have no idea why. I've attached two examples that cause the segfault. I tried a few different methods for parsing these files and it seems like the only factor that matters is the fasta file. You should be able to just use these in some of your existing tests but if not I can provide a function that's been breaking for me.

fasta_parser_test.fasta.txt

PuhA.fa.txt

Thanks!

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lmdu avatar lmdu commented on June 14, 2024

Thank you for providing test data! I have made a serious mistake to process full name for sequence without comment. I will quickly fix it in next version.

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cmorganl avatar cmorganl commented on June 14, 2024

Glad I could help and thanks for working on it so quickly!

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lmdu avatar lmdu commented on June 14, 2024

New version was released to fixed this issue. Thanks again!

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cmorganl avatar cmorganl commented on June 14, 2024

Awesome, thanks!

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