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afm_modeling2021

Ongoing work at Otago, modelling antiferromagnetic resonances.

bcdi

BCDI: tools for pre(post)-processing Bragg coherent X-ray diffraction imaging data

blender-chemicals

Draws chemicals in Blender using common input formats (smiles, molfiles, cif files, etc.)

blind_ptychography_gui

Blind_Ptychography python code supplements to

clash

A rule-based tunnel in Go.

classifier

Classifier by pytorch

cluster_monte_carlo

Exploration of metropolis-hastings (local) and Uli Wolff (cluster) algorithms on the Ising Model

cryofem

Deep learning based cryoEM density map feature enhancement

csxtools

Useful python tools for CSX (23-ID)

diffraction

Python library for simulating x-ray and neutron diffraction experiments and performing crystallographic calculations

enzpy

Extended Nijboer-Zernike (ENZ) theory toolbox for Python

examples

A set of examples around pytorch in Vision, Text, Reinforcement Learning, etc.

fitting_functions

geometry3d

Geometry3D: 3D Computational Geometrics Library

grainsizetools

A Python script for estimating grain size and differential stress via piezometers

hklpy

Diffractometer computation library with ophyd pseudopositioner support

imagej-processing-assistant-notebook

I.P.A.N. consist of a series of ready-to-use Jupyter Notebooks for performing image analysis. It includes a tutorial about the use of PyimageJ and a demonstration of image processing and data acquisition & visualisation.

lammps-tutorials

LAMMPS tutorials for Beginners

latticegraph_designer

PyQt based GUI tool which allows to visualize, design and export the lattice graph models.

machine_learning_approach_to_iron_based_soft_magnetic_nanocrystalline_materials_design

Machine learning approach to Fe-based soft magnetic nanocrystalline materials design

magnetic

Workshop: Micromagnetics with Ubermag

manim

Animation engine for explanatory math videos

mc-magnetic-phase-transition

microstructpy

Microstructure modeling, mesh generation, analysis, and visualization.

mlrose

Python package for implementing a number of Machine Learning, Randomized Optimization and SEarch algorithms.

mpi4py

Python bindings for MPI

mrm-2014-phaseunwrapping

Robust Phase Unwrapping for MR Temperature Imaging Using a Magnitude-Sorted List, Multi-Clustering Algorithm

nnphase

packing-generation

Hard-sphere packing generation with the Lubachevsky–Stillinger, Jodrey–Tory, and force-biased algorithms and packing post-processing.

phase-recovery

Resources for phase recovery (also called phase imaging, phase retrieval, or phase reconstruction)