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deepsequence

A generative latent variable model for biological sequence families.

devguide

The Python developer's guide

docs

TensorFlow documentation

drift

TODO

esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

eve

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

gat-pytorch

Reproducing Graph Attention Networks by Velickovic et al.

guillaumegenthial.github.io

hypothesis

Hypothesis is a powerful, flexible, and easy to use library for property-based testing.

iclr-blog-track.github.io

jupyter-o2

Run Jupyter on Orchestra 2

just-pandas-things

An ongoing list of pandas quirks

lifelines

Survival analysis in Python

lightning-bolts

Toolbox of models, callbacks, and datasets for AI/ML researchers.

lightning-hydra-template

PyTorch Lightning + Hydra. A very user-friendly template for rapid, scalable and reproducible ML experimentation with best practices. ⚡🔥⚡

loodvn.github.io

Lood van Niekerk website

metrics

Machine learning metrics for distributed, scalable PyTorch applications.

nice_pytorch

Nonlinear Independent Components Estimation (Dinh et al, 2014) in PyTorch.

notes

Course notes

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

pexpect

A Python module for controlling interactive programs in a pseudo-terminal

popeve

proteingym

Official repository for the ProteinGym benchmarks

python

python3statement.github.io

pytorch

Tensors and Dynamic neural networks in Python with strong GPU acceleration

pytorch-chemicalvae

sagemaker-containers

This support code is used for making machine learning frameworks (e.g. MXNet, TensorFlow) run on Amazon SageMaker.

solutions

Solutions for projects.

svcca