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ad-rnn

autoencoder

Represent the immune system TCR repertoire and estimate similarity and distance between different repertoires

bipartiteprobabilisticmatching

cheapnode2vec

Calculating Node2Vec on few nodes only, then propagating to the whole graph.

claire

TCR-HLA binding predictor

comuniy_detection

comunity detection with 1% labeled nodes

countingisalmostallyouneed

Code for the models described in the paper "Counting is Almost All You Need". This repeository contains code for the counting model, attTCR, and gTCR.

datasets

contains all data sets

edge-prediction

graph edges classification by topological attributes

efs

epitope_b_cells_predictor

Epitope b cells predictor

er-pb

ergo

ERGO is a deep learing based model for predicting TCR-peptide binding.

ergo-ii

ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction

gitignore

A collection of useful .gitignore templates

gramm

gramm-site

graph-ad

graph-al

Active-learning on graphs package

graph-analysis

Graph Projects

graph-measures

Topological feature calculators infrastructure.

graph-ml

Various machine learning methods to do classification on graphs

graph-ml--idan--

graphs-package

grma

Ofek & Yuli updated version for original GRMA written by Amit.

haplotype-admixture

hla_data

hwe_simulations

hwe_tests

hwetests

irma