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3dunetcnn

Keras 3D U-Net Convolution Neural Network (CNN) designed for medical image segmentation

afq

Automated Fiber Quantification

afq-browser

Browser-based visualization tools for AFQ results

ants

Advanced Normalization Tools (ANTs)

brainiak

Brain Imaging Analysis Kit

brainseg

Train fully convonlutional neural networks for brain segmentation.

brainstools

A suite of tools for medical image processing focused on brain analysis

cbig

cbrain

CBRAIN is a flexible Ruby on Rails framework for accessing and processing of large data on high-performance computing infrastructures.

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

core

RESTful API

data-science-your-way

Ways of doing Data Science Engineering and Machine Learning in R and Python

dcluster

Clustering by fast search and find of density peaks

deeplearntoolbox

Matlab/Octave toolbox for deep learning. Includes Deep Belief Nets, Stacked Autoencoders, Convolutional Neural Nets, Convolutional Autoencoders and vanilla Neural Nets. Each method has examples to get you started.

deepmedic

Efficient Multi-Scale 3D Convolutional Neural Network for Brain Lesion Segmentation

dhcp-structural-pipeline

structural analysis of neonatal brain MRI scans

diffusion-kurtosis-imaging

Estimation of white matter tract integrity metrics using Diffusion Kurtosis Imaging

dipy

Diffusion MR Imaging in Python

drawem

Developing brain Region Annotation With Expectation-Maximization

encode

Method for encoding brain connectomes in multidimensional arrays (tensors).

exprso

An R package to rapidly implement machine learning algorithms on genomic data

faster-rcnn.pytorch

A faster pytorch implementation of faster r-cnn

fmriprep

fMRIprep is a functional magnetic resonance image pre-processing pipeline that is designed to provide an easily accessible, state-of-the-art interface that is robust to differences in scan acquisition protocols and that requires minimal user input, while providing easily interpretable and comprehensive error and output reporting.

freeroi

Software for ROI analysis in neuroimaging

freesurfer

The official FreeSurfer repository maintained by LCN

freesurferformats

GNU R package for reading and writing FreeSurfer neuroimaging file formats.

fsl

Source code for FSL: http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/

gradient_analysis

graphpype

Neuropycon package of functions for electrophysiology analysis, can be used from ephypype and nipype

hosts

镜像：https://coding.net/u/scaffrey/p/hosts/git