Related Issues (20)
- Drag to reorder signatures, clinical variables, genes
- Smoothed exposures line plot after sorting by survival
- Options for log y-axes
- Trinucleotide normalization per-cohort HOT 1
- Default gene expression values
- Make sample select more hierarchical
- Don't store plot data in the Vue instance HOT 1
- Perform hierarchical clustering using Ward linkage HOT 1
- Better error handling
- Individual Sample Exposure Panel Doesn't Update After New Signatures Are Added HOT 2
- Set priority of mutation types in genes HOT 1
- Figure out way to hierarchically group mutation classifications and pathologic stage values HOT 2
- Inject "Other" tissue type into oncotree for datasets unable to be matched to a single code
- Text box to exclude (filter out) samples by ID
- Allow downloading of raw counts data in addition to processed data
- Trinucleotide normalization options for signatures
- Checkboxes for whether or not to consider particular signatures when clustering
- After clustering, correlate with various clinical and other data (genomic events, kataegis, germline events, drug response, HRDetect, ...)
- Add hide button to "stratification" plots
- Continuous-valued clinical variables as small bar plots rather than track plots
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