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abifreader

Python ABIF reader

aces

Application for College Entrance System

apache-flask

Python Flask (web framework) deployed with Apache

api-client-java

Provides a command line interface for API queries in Java.

asap

Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.

bedtools2

A powerful toolset for genome arithmetic.

beetl

BEETL

beginjava7

The program coded during the study of the Ivor Horton's book: Beginning java, java 7 edition

bio

Bioinformatics library for .NET

biotools

Scripts and tools for various data type and format (GFF, fasta/fastq, bed and so on) manipulation.

bloomtree

brackets

An open source code editor for the web, written in JavaScript, HTML and CSS.

cfutils

🧬 Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing data.

cheatsheets

RStudio Cheat Sheets

chip-seq-analysis

ChIP-seq analysis notes from Tommy Tang

chipseq-compare

Comparison of differential chip seq methods and rewriting/porting code along the way.

cindex

clustvis

ClustVis web tool

concerto-platform

Concerto Platform - Open-Source Online Adaptive Testing Platform

content

Official content for Harvard CS109

corset

Software for clustering de novo assembled transcripts and counting overlapping reads

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

cramtools

Format specification and java implementation for next-gen data.

d3

A JavaScript visualization library for HTML and SVG.

datasciencecoursera

The repo for the coursera course of "The Data Scientist’s Toolbox"

datasharing

The Leek group guide to data sharing

ddocent

a bash pipeline for ddRAD sequencing

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

developer-roadmap

Community effort to create roadmaps, guides and other educational content to help the developers get an idea about the software development landscape, learn and grow in their career.

digit-trl