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bioinformaticsjc

Slides, notes and schedule for Ashworth's Bioinformatics JC

briggsae_reference_genome_ms

busco-nf

busco2fasta

busco2phylo-nf

Nextflow pipeline for turning a set of BUSCO results into a species tree

busco_phylo_bias

buscopainter

Painting chromosomes using BUSCOs

caeno-ten-descriptions

Scripts and data files associated with our paper describing ten new species of Caenorhabditis

caeno_synteny_comparison

caenorhabditis_org

caensembl

Files related the Caenorhabditis Genomes Project Ensembl instance

caensembl-plugin

Template Ensembl plugin for GenomeHubs sites

caensembl_v2

Files and code associated with the update Caenorhabditis Genomes Project Ensembl genome browser

cbovis_manuscript

Scripts and files associated with the C. bovis manuscript

cgp

Software, scripts and documents related to the Caenorhabditis Genomes Project (caenorhabditis.org)

cgp-site

circos-scripts

divergent_haplotype_analysis

Files and code associated with the C. elegans divergent region manuscript

divergent_region_reviews

haemonchus_qtl

Comparing avermectin QTL between C. elegans and H. contortus

heligmosomoides_ms

Code and plots associated with "Ancient diversity in host-parasite interaction genes in a model parasitic nematode"

lep_fusion_split_finder

lepbase-search

an Ensembl plugin to provide Lepbase autocomplete and search

litomosoides_ms

Code and files associated with the Litomosoides and filarial XY manuscript

lstevens17.github.io

:triangular_ruler: Jekyll theme for building a personal site, blog, project documentation, or portfolio.

mitohifi

Find, circularise and annotate mitogenome from PacBio assemblies

monophyler

nemasm

Nextflow pipelines for assembly and analysis of nematode genomes

nematode_orthology_clustering

nematode_phylogenomics