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Name: Logan Whitehouse

Type: User

Company: Virnika

Bio: Co-Founder and CDO @ Virnika, building the next wave of customer service. Data scientist, deep learning developer, computational biologist.

Location: Chapel Hill, NC

Logan Whitehouse's Projects

Time to learn Rust

I got tired of bookmarking everything I found useful in my browser, so here's an organized list of stuff I think is useful/cool.

Had 3 days to run some chipseq data that I recieved with 1 day to spare, here's the results of late night frantic figuring out a workflow.

Computational Biology- Spring 2021

A little bit of documentation explaining how to use conda environments for reproducible bioinformatics.

Marchetti lab pipeline for diatom metatranscriptomics analyses using Kallisto, Diamond, and DeSeq2 in conjunction with PhyloDB.

Quick tutorial and example code for using Snakemake in a non-NGS context.

Various one-liner/short scripts and commands for everyday usage, focused on bioinformatics.

Config files for my GitHub profile.

Various scripts to organize and analyze multi-channel electrode array data.

Small script and sample data to merge phylodb data with Kallisto/Salmon/DIAMOND output for gene and taxonomy annotation.

Phylogenetics toolkit for the PyData Ecosystem

Python module to query GBIF or the NCBI Taxonomy database for synonym names of target species.

genotype dimensionality reduction with a VAE

Shiny Python boilerplate for Snakemake runs.

UNC Bioinformatics and Computational Biology Dissertation based on https://github.com/jayrobwilliams/UNC-Dissertation-Template/tree/master