Output realigned BAM files in Cancer Somatic Mode about octopus HOT 4 CLOSED

Hi Chris,

This feature has been added to the upcoming v0.5-beta (along with lots of other improvements). I haven't yet implemented 'split' realigned BAMs for multi-sample calling though - I'm aiming to do this at some point, but probably not in time for v0.5-beta.

Best,
Dan

from octopus.

Hi Dan,

Thanks for the reply.
Question:

1. Any E.T.A for the next v0.5 version?

Best,
Chris.

from octopus.

Hi Chris,

It's in the final rounds of testing; I'm not planning on making any more significant changes, so if everything goes smoothly then I'd say about a week.

Also, it turned out to be pretty simple to implement 'split' realigned BAMs for multi-sample calling, so that will make it into v0.5-beta after all!

Cheers,
Dan

from octopus.

Hi Dan,

That is great news !
A week to go and ... with split realigned bam for Tumor-Normal Somatic Model! 👍 👍
I will be glad to test it out, in my case mostly with Cancer Model in Somatic Mode, but also with multiple tumor samples from same individual.

Thanks,
Best,
Chris

from octopus.