luoluo690 Goto Github PK
Name: Ning Li
Type: User
Company: Northeast Normal University
Ning Li's Projects
aegilops-sitopsis-genome-project.io
Genome assembly and annotation for five Aegilops Sitopsis genomes
ale
Reproducible Scripts for Cho et al., 2018
bs-snper
clari-te
csaa-paper
csaa论文
design-resource
A list of design resources.
edta
Extensive de-novo TE Annotator
epiteome
Simultaneous Detection of Transposable Element Insertion Sites and their DNA Methylation Levels from Plant Genomes
fastq_phred_convert
Converts 33 offset to 64 and vice versa
gff3toembl
Converts Prokka GFF3 files to EMBL files for uploading annotated assemblies to EBI
hassl_homogeneous_analysis_of_sra_rnasequencing_libraries
ltr_retriever
LTR_retriever is a highly accurate and sensitive program for identification of LTR retrotransposons; The LTR Assembly Index (LAI) is also included in this package.
mdust
mdust from DFCI Gene Indices Software Tools (archived for a historical record only)
minimap2
A versatile pairwise aligner for genomic and spliced nucleotide sequences
mite-tracker
MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes
mule-methylation
pseudoref
Make Pseudo-Reference Genome from VCF/BCF
rmats-stat
rnabio.org
website for the rnaseq course
upsetr
An R implementation of the UpSet set visualization technique published by Lex, Gehlenborg, et al..
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