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16s_analysis_pipelines

16s_tutorial

amplicon_processing

Scripts and workflows for MiSeq amplicon processing

astrobiomike.github.io

Site to help biologists wade their way into bioinformatics.

binderq2

Specifying a conda environment with `environment.yml`

centralia_16s_analysis

Community analysis for 16S rRNA Tag-sequencing results using QIIME

dadaist2

🎨 dadaist2 - Highway to R

dgiovannelli.github.io

docs

Source repository for https://docs.qiime2.org

embomicrocom

Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities

fastqc

github

gitsavvy

Full git and GitHub integration with Sublime Text 3.

learn_bash

Toy files and training material to introduce Linux to molecular biologists

longread_tutorials

Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data

masame

Code to run the shiny functions for the MASAME suite

mats-blue-hole-maldives

Genome-resolved metagenomics revealed novel microbial taxa and distinct metabolism from giant filamentous microbial mats inhabiting anoxic deep reefs of a Maldivian Blue Hole

microbiolmarina2023

Marine Microbiology Practical Course 2023

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

rda_varpart_ggplot2

Script para gráficos dos resultados da RDA e do varpart do pacote `vegan`

sendscriptwhatsapp

Script para enviar o Roteiro do filme Shrek, linha por linha, no WhatsApp

spades

SPAdes Genome Assembler

subductcr_16s-diversity

Data and analysis file of the Biology Meets Subduction paper related to the 16S rRNA Bacterial diversity along the subduction zone of Costa Rica

supplementary-code

visual16s

This is a R package for 16S visualization. Including dada2 reads track, stacked bar plot, alpha diversity, beta diversity and log2 fold change.

workshopai

Coding with ChatGPT workshop

wrangling-genomics

Lesson for wrangling genomics data