I am a PhD student computational biology at the RIMLS Nijmegen.
seq2science: Automated preprocessing of Next-Generation Sequencing data.
qnorm: Fast-ish (and correct!) quantile normalization in Python.
Type: User
Company: Solynta
Location: Wageningen, the Netherlands
I am a PhD student computational biology at the RIMLS Nijmegen.
seq2science: Automated preprocessing of Next-Generation Sequencing data.
qnorm: Fast-ish (and correct!) quantile normalization in Python.
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples. http://anansepy.readthedocs.io
:atom: The hackable text editor
Tools to process and analyze deep sequencing data.
Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing experiments.
Download genomes the easy way.
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Source code for JBrowse 2, a modern React-based genome browser
A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processing
Free-surface implementation of lattice boltzmann in Python.
Aggregate results from bioinformatics analyses across many samples into a single report.
Test data for MultiQC. See https://github.com/ewels/MultiQC
Phylogenetic orthology inference for comparative genomics
My PhD thesis
A conda-smithy repository for pretty_html_table.
Performant Pythonic GenomicRanges
Package for fetching metadata and downloading data from SRA/ENA/GEO
Fast-ish (and correct!) quantile normalization in Python.
Solutions to http://rosalind.info/problems/list-view/?location=bioinformatics-stronghold
Single Cell Epigenome-based Inference of Activity
Automated preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and RNA-seq workflows. Works equally easy with public as local data.
Basic implementation of smoothed-particle hydrodynamics (SPH) in Python.
This is the development home of the workflow management system Snakemake. For general information, see
A statically generated catalog of available Snakemake workflows
This is the development home of the Snakemake wrapper repository, see
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Repository to store teaching materials
Voorbeeld repository voor de minor programmeren.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.