Comments (3)
macmanes
commented on July 26, 2024
Hmm, this is a Trinity problem, so it might be best posted over there. In reading some of those messages, it looks like some of the issue might be related to version incompatabilities. What versions of Salmon and Trinity are you using?
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rafaeltiveron
commented on July 26, 2024
Versions:
Oyster River Protocol 2.1.0, with:
- Trinity 2.8.4
- Salmon 0.12.0
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rafaeltiveron
commented on July 26, 2024
I've fixed. I was running two fastq files that are not paired-end to each other. So, no mapping conditions were found, like not closing gaps. With the correct files, everything was gone ok. Sorry for this inconvenience.
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Related Issues (20)
- Pipeline crashed at transabyss HOT 2
- Error 141 on installation test HOT 5
- Error during installation Python >=3.5 HOT 2
- awk: program limit exceeded: maximum number of fields size=32767 HOT 2
- Run on singularity / without logging into container
- Installation and Usage questions HOT 1
- Orthofinder failure when running test dataset
- Add external assemblies to OrthFuse?
- Several Samples for Assembly
- orthofuser.mk run failure HOT 1
- Empty file at Foo.list7
- ORP | Can handle single-end files HOT 1
- sampledata test failed HOT 2
- Issue with SPADES2/Kmer length HOT 1
- Reduce orthofuse intermediate file count HOT 1
- TransRate-ORP: Which modifications were made? HOT 2
- Computation of the unique genes per assembly provided by the quality report
- ORP 2.3.3 with docker doesn't start HOT 1
- Make error HOT 1
- The _salmon.XXXX.stderr file size balloons out of control HOT 1
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