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amniotic_fluid

Analysis of Amniotic fluid

amplicon-seq-dada2

Snakemake pipeline for amplicon sequencing using dada2

an-introduction-to-applied-bioinformatics

Interactive lessons in bioinformatics.

analysis_of_microbiome_community_data_in_r

This is the source code for the "Analysis of Microbiome Community Data in R" ICPP 2018 workshop. The website is available at: https://grunwaldlab.github.io/analysis_of_microbiome_community_data_in_r/

ar

bio_g_dataset

bioconda-recipes

Conda recipes for the bioconda channel.

biom

Development version of the biom package for R

bowtie2_samtools

Dockerfile for bowtie2 v 2.4.1 and samtools 1.10 running on ubuntu 20.04

covirt19_microbial

This repo is the hub for version control of the COVIRT19 microbial subgroup code on the TACC cluster

data-_viz

dbiology

A repository for my scripts in the computaional / digital biology course

docker_images

repository for docker images that are hosted on docker hub

galaxy-lib

Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.

hello-world

this is my first repository on github

helloworld

hmo

hybrid_metagenomics

An idea that I am working on that intergrate 16S and WGS metagenomic sequencing

ihcp

Aagaard Lab repo for the IHCP project

jupyter_scipy_cc2020

test dockerhub builds for container camp

krona

Interactively explore metagenomes and more from a web browser.

lab_meeting

Aagaard Lab meeting scripts for Intro to Bioinformatics

lmatz

Matz_et_al_T2D_AD

madscientist314.github.io

matplotlib

matplotlib: plotting with Python

metaphlan

MetaPhlAn is a computational tool for profiling the composition of microbial communities from metagenomic shotgun sequencing data

mia

Microbiome analysis

microbiome-engineering

Analysis of the amplicon sequencing from the microbiome engineering project

microbiome-tools

For tool creators to share their inventions that analyze, visualize, and make meaning of microbiome data.

microbiome_binder_repo

test microbiome tutorial series binder