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Maël Lefeuvre's Projects

git-cc icon git-cc

A private git/github crash course

grups-rs icon grups-rs

An ancient DNA genetic relatedness estimation software relying on pedigree simulations

grups-rs-benchmark icon grups-rs-benchmark

A set of snakemake workflows and jupyter notebooks to benchmark the runtime, memory consumption, and performance of GRUPS-rs.

grups.plots icon grups.plots

grups.plots is a companion R package to grups-rs, providing with a Shiny dashboard, harboring multiple interactive visualizations, utilities and summary statistics to analyse its results

mentesh-tepe-kinship-analysis icon mentesh-tepe-kinship-analysis

Script and utilities applied to perform kinship analysis between ancient Mentesh-Tepe individuals, found in (Garino-Vignon, P., et al 2023)

rust-htslib icon rust-htslib

This library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.

rust-htslib-memleak-mre icon rust-htslib-memleak-mre

A Quick'n'dirty minimal reproducible example for https://github.com/rust-bio/rust-htslib/issues/401

tkgwv2 icon tkgwv2

[Fork] Forked project of TKGWV2 https://github.com/danimfernandes/tkgwv2. This fork merely *adds* upon the initial API, by providing users with an additional CLI for the helper scripts: TK-helpers.py (see the develop branch). The core algorithm of TKGWV2 remains untampered.

tkgwv2-mre icon tkgwv2-mre

A quick'n'dirty Minimal Reproducible Example illustrating https://github.com/danimfernandes/tkgwv2/issues/6

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