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These are the scripts from my phylogenetics paper. I don't think they will work as is, I just wanted to back them up. Please don't judge me for their inelegance, I made them when the only programming language I had any experience with was AWK, and not much of that.
Training materials from the EMBO course Computational analysis of protein-protein interactions: Sequences, networks and diseases, taking place from 05 to 10 November 2018 in Rome, Italy.
Code and documentation for a discrete dynamic model of ABA-induced stomatal closure.
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
This repository contains scripts used for various sections of the paper "Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface".
Code and data for "Limited Utility of Residue Masking for Positive-Selection Inference," by SJS, ETD, COW.
AltAnalyze is a multi-functional and easy-to-use software package for automated single-cell and bulk gene and splicing analyses. Easy-to-use precompiled graphical user-interface versions available from our website.
Companion scripts for Amanita comparative genomics paper "Rapid divergence of genome architectures following the origin of an ectomycorrhizal symbiosis in the genus Amanita"
Use single-cell transcriptomics and proteomics to study autoimmune diseases (AMP Phase I paper)
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
This is a pipeline for variant annotation in the diagnosis of rare genetic disorders. It relies on open source data and has instructions for software installs.
construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes
In this repository I describe the workflow followed to process and analyze the data of the study "A genomic view on Aspergillus fumigatus against 18 species of the genus Aspergillus: Conservation, evolution and specific virulence genes"
A collection of various awesome lists for hackers, pentesters and security researchers
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
These are scripts that were written for work I did annotating version 4 of the maize B73 genome
Collection of scripts for bacterial genomics
Quick and dirty script to download and analyse bacterial genomes from NCBI
:sparkles: Build a beautiful and simple website in literally minutes. Demo at http://deanattali.com/beautiful-jekyll
Code for statistical binning and related scripts
My collection of light bioinformatics analysis pipelines for specific tasks
Collection of Python and other data analysis resources
Robs General Bioinformatics Repo.... Free code for all to use
Repo for student website
Scripts for CMG-Biotools
A list of useful bioinformatics resources
A Simple Web Application Framework for PHP
A simple template engine for PHP.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.