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Inston Cai's Projects

aav_fitness_landscape icon aav_fitness_landscape

Analysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design"

affine icon affine

There can be more than Notion and Miro. AFFiNE(pronounced [ə‘fain]) is a next-gen knowledge base that brings planning, sorting and creating all together. Privacy first, open-source, customizable and ready to use.

ai-for-bio icon ai-for-bio

A free and collaborative space for Machine Learning applied to Biology

alphatools icon alphatools

Just a list of AlphaFold, RoseTTAfold and related tools

alphscore icon alphscore

Improving pathogenicity prediction of missense variants by using AlphaFold-derived features

autopvs1 icon autopvs1

An automatic classification tool for PVS1 interpretation of null variants

biocluster icon biocluster

Tutorial on building a computing cluster for bioinformatics

carsidock icon carsidock

Official repo of CarsiDock proposed by CarbonSilicon AI.

custom icon custom

Codon optimizer for tissue-specific expression

dada2 icon dada2

Accurate sample inference from amplicon data with single nucleotide resolution

deepfacelab icon deepfacelab

DeepFaceLab is the leading software for creating deepfakes.

design_tools icon design_tools

A compilation of deep learning methods for protein design

dmpfold2 icon dmpfold2

Fast and accurate protein structure prediction

dnabert icon dnabert

DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

dnapipeline icon dnapipeline

通过配置文件实现一条命令完成常见DNA线的生信分析

eggnog-mapper icon eggnog-mapper

Fast genome-wide functional annotation through orthology assignment

ember3d icon ember3d

Ultra-fast in-silico structure mutation

esm icon esm

Evolutionary Scale Modeling (esm): Pretrained language models for proteins

eve icon eve

Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.

evodock icon evodock

A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking

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