ai-web

ascend

Analysis of Single Cell Expression, Normalization and Differential expression

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

bioperl-live

Core BioPerl 1.x code

biotool

bioworkflows

In-house computational biology workflows at Columbia Neurology

cc_course_stream1

All the course materials for the "Stats from Scratch" stream of our Data Science course

cc_course_stream2

All the course materials for the "Wiz of Data Vis" stream of our online course

cc_course_stream3

All the course materials for the "Mastering Modelling" stream of our online course

cell2location

Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

circrna

Predict circRNA pipeline

deep-learning-with-python-notebooks

Jupyter notebooks for the code samples of the book "Deep Learning with Python"

deepvariant

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

destin

Toolkit for single-cell analysis of chromatin accessibility

dorothea-py

Dorothea package in Python

genewalk

GeneWalk identifies relevant gene functions for a biological context using network representation learning

goatools

Python library to handle Gene Ontology (GO) terms

gohugo.org

Site for http://www.gohugo.org/

graphlan

High-quality circular representations of taxonomic and phylogenetic trees

groovy

Apache Groovy: A powerful multi-faceted programming language for the JVM platform

h3agwas

GWAS Pipeline for H3Africa

harmony

Fast, sensitive and accurate integration of single-cell data with Harmony

hexsticker

:sparkles: Hexagon sticker in R

hku-single-cell-workshop

Single-cell analysis workshop at HKU

hugo-book

Hugo documentation theme as simple as plain book

immunedeconv

A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter)

isoseq

IsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads

jcvi

Python library to facilitate genome assembly, annotation, and comparative genomics

labupdate