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Jiayi-Njucm avatar Jiayi-Njucm commented on July 24, 2024

After debugging for long time, I found the problem.

in ckg/graphdb_connector/connector.py

def run_query(query, parameters={}):
    driver = getGraphDatabaseConnectionConfiguration(configuration=None, database=None)
    data = getCursorData(driver, query, parameters=parameters)

    return data

this query is :
MATCH p=(project:Project)-[:HAS_ENROLLED]->(:Subject)-[:BELONGS_TO_SUBJECT]-(:Biological_sample)-[:SPLITTED_INTO]->(a:Analytical_sample)-[r:HAS_QUANTIFIED_PROTEIN]->(protein:Protein)  WHERE project.id="P0000001"  AND toBoolean(r.is_razor) RETURN a.external_id AS name, a.external_id AS x,COUNT(DISTINCT(protein.id)) AS y, a.group AS group ORDER BY group;

I use this cypher in neo4j, and the result is none. Next, I click 'project' node to find 'P0000001', then find the problem is 'HAS_QUANTIFIED_PROTEIN' relationship disappeared!

Before I uploaded data to the project p0000001 on ckgapp , which may destroy the relationships in the database.

So I reimported the neo4j dump file for verification, and it succeeded.

image

This platform is very comprehensive and perfect!Thank you for your open source code, which is worth learning!

from ckg.

lx5005 avatar lx5005 commented on July 24, 2024

I am also using CKG. Are you interested in communicating? If so, please contact [email protected]

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