Comments (2)
yes.is the refseq.genomes.k21.s1000.msh is the latest version ?
from mash.
No, it is quite old. I would advise to create a new sketch. NCBI RefSeq now has 330,648 genome reference assemblies while the sketch has 91,282. Sometimes I hit deprecated accession numbers that are removed from new metadata assembly_file_manifest.txt
from mash.
Related Issues (20)
- how many genomes can the mash deal with?
- output the containment sequence HOT 3
- Sorting on mash-distance HOT 1
- Sketching paired- and single-end reads together
- Inconsistent number of matching hashes HOT 1
- Are Mash distances always symmetric?
- Missing include limits
- Mash dist -p, wrong number of threads (bug?)
- m1 ARM support?
- Cannot update Mash from version 1.1 to version 2
- -M for weighted kmer
- Can Mash accurately classify subspecies? HOT 1
- Doubts when using mash on multiple assemblies HOT 1
- MASH distance for AA
- Explanation of the .msh format HOT 2
- The release version of refseq.genomes.k21.s1000.msh
- Argument list too long HOT 2
- Distance between two genomes not consistent when I chnage the rest of the dataset. HOT 2
- Add brief description about what MASH does to the README.md
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from mash.