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Marc Trunjer Kusk Nielsen's Projects

abxaware icon abxaware

R package: Aggregate and plot antibiotic usage data by access, watch, and reserve (AWaRe) groups.

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

cprr icon cprr

Functions for working with Danish CPR numbers

datatoolbox icon datatoolbox

For the Data scientist toolbox course on coursera.org

dehumanizer icon dehumanizer

just a docker file wrapping https://github.com/SamStudio8/dehumanizer

kraken2 icon kraken2

The second version of the Kraken taxonomic sequence classification system

madsr icon madsr

an R package for handling data from the danish microbiological system MADS

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

patogener icon patogener

Identification, AMR gene detection and plasmid annotation of pathogens. Just a practice project for now

skimr icon skimr

A frictionless, pipeable approach to dealing with summary statistics

viralrecon icon viralrecon

Assembly and intrahost/low-frequency variant calling for viral samples

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