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analysis

Exploration of analytical techniques relevant to MBON

api

custom application programming interface (API) to query marine biodiversity

aquamaps-downscaled

initial attempt to downscale AquaMaps species distribution models to finer spatial resolution a la GEBCO bathymetry (15 arc second)

aquamapsdata

R package for accessing curated data from AquaMaps.org

aquamapsduckdb

Reformatting of aquamapsdata R package with faster duck database and new terra package for rasters

auvctdrov

messin about at mbari

awesome-erddap-datasets

Curated list of datasets available via ERDDAP

bio-idx-wg

MBON Biodiversity Indicators Workin Group -- various outputs, starting with kickoff survey

bio_data_scripts_ioos_workshop_2019

Bio data scripts & code samples related to the IOOS code sprint Biological Data Session

bonbox

overall strategy and issues for developing a replicable biodiversity observation network, ie BON in a BOX

calcofi-api

Test API for CalCOFI

ckan-test

Testing catalog querying capability of CKAN at data.gov and data.ioos.us

condition-reports

connectivity

larval dispersal connectivity across US national marine sanctuaries

data-management-checklists

[DRAFT] data management protocol checklists containing recommendations from the MBON Data Management Working Group

dataset-registry

Registry of MBON-supported datasets

datatransformers

Cookbook of scripts to transform data for use in OBIS/GBIF and programs such as Pole to Pole

docker-rstudio-shiny

docker recipe for rstudio-geospatial+shiny

dwc-bias-analysis

An analysis of sampling spatial, tempora, and taxonomic biases for Darwin-Core (Dwc) data.

edna-vis

visualization app for environmental DNA (eDNA), using R shiny

edna_microbes_whales

eDNA params files

ednatools

R functions for eDNA analysis for the Marine Biodiversity Observation Network (MBON)

erddap-config

ERDDAP config files (setup.xml, datasets.xml)

extract-app

Application (using R Shiny) for setting up extraction of ERDDAP datasets over space/time/taxa/variables

extractr

Extraction functions using R for common datasets (ERDDAP, DataOne, etc)

fk-iea

Florida Keys NMS + IEA + MBON infographics

fk-iea_tmp

Florida Keys IEA, temporary look with Distill

gmbi

global marine biodiversity indicators (gmbi; pronounced "gumby")

help

Help documentation for MarineBON

hplc-vis

shiny app demonstrating leaflet map & plotly chart