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mark-s-hill's Projects

cancereffectsizer icon cancereffectsizer

cancereffectsizeR: an R package to measure the cancer effect size of somatic mutations

cellcoal icon cellcoal

CellCoal: coalescent simulation of single-cell NGS genotypes

chisel icon chisel

CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links

hatchet icon hatchet

HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jointly across multiple tumor samples from the same patient, and that leverages the relationships between clones in these samples.

modules icon modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

rust-utils icon rust-utils

A collection of command line utilities built in rust.

rustlings icon rustlings

:crab: Small exercises to get you used to reading and writing Rust code!

sarek icon sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

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