martin-steinegger Goto Github PK

academic-kickstart

af-protein-universe

bash

bioconda-recipes

Conda recipes for the bioconda channel.

classrepo

colabfold

Making Protein folding accessible to all via Google Colab!

complete-striped-smith-waterman-library

enzymedesign

famsa

Algorithm for large-scale multiple sequence alignments (400k proteins in 2 hours and 8BG of RAM)

fann-opencl

opencl powerd Fast Artificial Neural Network Library (FANN)

fast_gotoh

vectorized (8 times parallel) Gotoh (local / global / freeshift)

flash

FLASH (Fast Length Adjustment of SHort reads)

fold_tree

snakemake pipeline for creating trees from sequence sets

foldcomp

Compressing protein structures effectively with torsion angles

geomelody

iPhone app for local music experience

gor

Java implementation of GOR I,III,IV,V secondary structure prediction

hit-counter

Easily Count Hits 📈 on a Website by Requesting a SVG Displaying Hit Count 🎯

homebrew-science

:beer::microscope: Scientific formulae for the Homebrew package manager

java-appengine-utils-

util for app engine (GeoDb for Java), ...

kraken-protocol

Metagenome analysis using the Kraken software suite

kraken2

The second version of the Kraken taxonomic sequence classification system

krakentools

KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files

ksw2

Global alignment and alignment extension

martin-steinegger.github.io

mmseqs static website

mmseqs2

MMseqs2: ultra fast and sensitive search and clustering suite

othello

Othello / Reversi GUI and Ki (alpha beta pruning with bitboard optimization)

parasail

Pairwise Sequence Alignment Library

personal_website

phaser

phasing and Allele Specific Expression from RNA-seq

plass-analysis

Benchmark for PLASS paper