Comments (1)
Martinsos
commented on July 30, 2024
This idea is really good. It would be vise to try with Landau Vishkin until we reach k = 64, and if no solution is found then continue with Myers. Of course we should try moving this boundary of 64, but I believe it could be good. This way we would get the most of both methods! Of course this is all just for SHW alignment mode.
from edlib.
Related Issues (20)
- Is there a suffix mode? HOT 3
- align two arrays of strings HOT 7
- anchored alignment HOT 2
- Error when query or target is the empty string and task='path'
- memory leak identified in myersCalcEditDistanceSemiGlobal
- Mention Perl binding in Readme HOT 2
- finding all alignments within the string HOT 5
- Cigar results interpretation
- Missing table data in paper
- Possible to customize costs used for gap opening, gap extension, indel and substitutions? HOT 3
- Wheels for python 3.10 HOT 2
- [Documentation] (1) mention ruby-bindings and (2) mention "why use edlib" in the main README HOT 1
- results different with usearch and vsearch global alignment
- Wheels for macos python 3.11 HOT 1
- Choosing longest or shortest alignment HOT 1
- How to report all possibale positions not only the best one ? HOT 1
- Cannot install edlib for Python 3.11 on Windows HOT 1
- Perl Wrapper around Edlib
- Multiple locations but one CIGAR?
- Documentation outdated (v1.1.2 vs v1.2.7)
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from edlib.