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agents.jl

Agent-based modeling framework in Julia

autocorrelations.jl

Fast evaluation of autocorrelation functions

bactos.jl

Agent-based modeling framework for bacterial behavior, based on Agents.jl

bioformatsloader.jl

A julia package to load images using bioformats

blobdetection.jl

blobtracking.jl

Detect and track blobs in video

bubblebath.jl

Generate loose packings of spheres in orthorhombic domains, in 2 and 3 dimensions.

dracula.nvim

Dracula colorscheme for neovim written in Lua

fpt_sphere

hugo-bearcub

🐻 A lightweight Hugo theme based on Bear Blog and Hugo Bear Blog

hungarian.jl

The Hungarian(Kuhn-Munkres) algorithm for Julia

ifussd2022

Animations for IfU SSD 2022

iminuit.jl

A Julia wrapper of iminuit. iminuit is a Python interface to the C++ version of the function minimization and error analysis package MINUIT.

ioutils

Some useful I/O functions

live-pluto-test

mastrof.github.io

meansquareddisplacement.jl

Evaluate MSD of timeseries

microargos

microbeagents.jl

Agent-based modeling of microbial motile behavior via Agents.jl

particles

Utility routines for particle-like data and integration with common molecular structure formats

particletracking.jl

Track moving particles with Julia, in two and three spatial dimensions

psi_structuralindicator.jl

Julia script to evaluate the structural indicator Ψ (defined in Foffi & Sciortino, J Phys Chem B 2022).

publicationfiguresmakie.jl

Makie theme with some publication-ready settings

rosepine-kitty

Soho vibes for kitty

spatialstructure

Structural analysis of particle-like data

stockerlabws2023_bacterialsimulations

surfaces

Simple models of bacterial transport

vmdtcl

Julia wrappers around TCL for VMD (http://www.ks.uiuc.edu/Research/vmd/)

waterlily.jl

Fast and simple fluid simulator in Julia