mattnolanlab Goto Github PK

ei-attractor

Excitatory-Inhibitory continuous attractor model of grid cells.

elife_grid_anchoring_2024

Code for reproducing plots in Clark and Nolan 2024

ephysanalysistools

Extracellular electrophysiology data analysis tools

grid_cell_analysis

Analysis for grid cells, grid fields, and head direction.

gridcells

Grid cell data analysis package.

in_vivo_ephys_openephys

Analysis for in vivo electrophysiology recordings saved in open ephys format.

independent-theta-phase-coding

Code for 2015 eLife paper

inter_intra_variation

Analyses for investigation of large scale organisation of stellate cell properties

inter_intra_variation_executable

Code for executable version of Pastoll et al. 2020

lec_to_mec

Analysis code used to generate figures and statistical ouputs for https://www.biorxiv.org/content/10.1101/2022.08.25.505296v1

mattnolanlab.github.io

The lab website!

nolan-brainrender

Repository for plotting different brain areas using BrainRender

oe_whitening

oespikeutilities

openephys-fileio

For writing of continuous and binary file format of open-ephys

psam_pilot

Repository for analysing and plotting data from pilot experiment testing inactivation of L1 & L2 INs with an ultrapotent PSAM-PSEM system. Magnus CJ, Lee PH, Bonaventura J, Zemla R, Gomez JL, Ramirez MH, Hu X, Galvan A, Basu J, Michaelides M, Sternson SM. Ultrapotent chemogenetics for research and potential clinical applications. Science. 2019 Apr

psics

PSICS - Parallel Stochastic Ion Channel Simulator

pyspad-rtd

read the docs files for the SPAD project

r.tutorial

ramp_analysis

ramp_simulations

ramsden_mec

Registration pipeline for Allen Brain Atlas data

simtools

You want to run quick simulations. You want to build them fast and parameterize them. Use simtools.

spatialephysanalysis

Analysis for in vivo extracellular recordings.

stereo_targeting

Visualise injection / tetrode trajectories

tennantetal2018

Code used for behavioural analysis in Tennant et al, 2018 (Cell Reports)

tetroplater

An open-source circuit for microwire tetrode gold plating

theta-sequence-network-model

Code for the 2016 eLife paper