Comments (2)
clarencecastillo
commented on July 17, 2024
Implemented deployment scheme: centralized deployment. Simulation reporting does not show changes despite implementation of centralized deployment.
- Entire population is distributed randomly around the designated central eco_cell when 'eco_cell_capacity' is reached.
- Follows the 'eco_cell_capacity' key in parameters. Randomly fills in adjacent eco_cells after reaching 'eco_cell_capacity'.
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clarencecastillo
commented on July 17, 2024
Bug regarding incorrect centralized location reporting now resolved. Problem was caused by genetic.py's Organism.clone(). Function does not properly deepcopy() the status dictionary of each organisms. It simply references all status dictionary of all organisms into one original dictionary. Reporting location now show the desired results according to the centralized locations. Was resolved by manually referencing each of the original organism to be cloned's status dictionary keys into the different clones. See genetic.py.
- Location status of every individual now reports correct locations according to the centralized deployment scheme.
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Related Issues (20)
- Removed all unused modules in COPADS HOT 1
- add database logging in examples 3, 4 and 5 HOT 1
- writing function documentation for dose.simulate() function HOT 1
- Rename max_cell_population in simulation_parameters into tape_length HOT 1
- refactoring simulation_calls.deploy() function HOT 1
- add population name into Organism.status dictionary HOT 1
- extract() support methods HOT 1
- offsprings to store parents' identity in offsprings' status as list in status['parents'] HOT 1
- Refactor revive_simulation() and simulate() to call simulation_core() HOT 1
- 08_revive_simulation_03.py returns a TypeError exception when reconstructing World HOT 1
- Reconstruct write_parameters() to handle all kinds of simulation HOT 1
- write brief in-file documentation for examples HOT 1
- list the main means of how to analyze simulations #03, 04, 05
- link up database_calls.db_list_xxx functions for calls from DOSE shell HOT 1
- dose shell - convert objects (from results dictionary) to Python objects (in userdata dictionary)
- Update documentation for examples 13, 14, 15 and 16 under Examples and Case Studies
- Implement get_status_by_generation function in analytics.py HOT 1
- wiki - Clarence's short biography HOT 1
- Is our point mutation operator biologically sound?
- Problems with finding diameter of network prior to implementation of Diameter() in dossier.py
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