maximilianh Goto Github PK

acgi

Code for ACGI Ethereum demo

awesome-pipeline

A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

bioconda-recipes

Conda recipes for the bioconda channel.

brca-exchange

Overall management and deployment of the BRCA Exchange web portal and pipeline scripts

browserdocker

UCSC Genome Browser Docker

browserinstall

An install script for the UCSC Genome Browser

cellbrowser

main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org

chm13

The complete sequence of a human genome

cpython

Semi-official read-only mirror of the CPython Mercurial repository

crisporpaper

Code for the CRISPOR article, all data and code to create figures and analysis

crisporwebsite

All source code of the crispor.org website

crispranalysis

code and data to analyze crispr offtargets

crisprotanalysis

analysis of cirspr/cas9 offtargets

crispy-doom

Crispy Doom is a limit-removing enhanced-resolution Doom source port based on Chocolate Doom.

dwg-website

GA4GH Data Working Group website hosted at ga4gh.org

easy-data

easy access to benchmark datasets

genebrowser

gene table for sspygene

goana

intronprospector

Identify putative introns in RNA-Seq alignments

kent

UCSC Genome Browser main kent repository

kentutils

UCSC command line bioinformatic utilities

knowledger

A DCC-like system to submit data and metadata and keep track of submissions

lindel

maxplot

fast javascript scatter plot library

maxtools

Various command line tools, mostly for bioinformatics, for .tab,.bed,.maf plus various parsers

multisub

Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input directory and merges everything into a single output directory. Auto-detects input file formats. Can submit the results to multiple repositories from the command line.

open-data-registry

A registry of publicly available datasets on AWS

ptmfinder

trying to find PTM sites in fulltext papers

pubmunch

various tools to download, convert and process the full text of scientific articles

pubmunch3

various tools to download, convert and process the full text of scientific articles