mcelrjo Goto Github PK

aginformatics

Python Programming for Applied Sciences

autmgdd-ios-

blastp_nr

Script for reducing redundancy in a protein fasta file.

diseaseforecaster

Script for predicting when turfgrass diseases will occur based on weather data.

findorf

ORF prediction of de novo transcriptome assemblies

gitnotes

Notes on how to use Git and Github derived from various sources including Codacademy

herbicide_applicator

mutationfinder

Python script for finding target-site mutations correlated with herbicide resistance.

ngs-scripts

scripts!

pygreenturf

Easy to use Python script for color analysis of digital images

rename_transcriptid_for_trinotate

Script for renaming non-Trinity transcript Ids to make them compatible with Trinoate

rnaseq_pipeline_ngs2013

rnaseq_tutorial

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.

snakeampseq

trinbank

A file format for contigs derived from Trinity and annotated with Trinotate

trinotateextractor

Extract fasta transcripts from assembly or pep file based on keywords.

variousscripts

Various Python and Shell Scripts for Routine Text File Manipulation and Searching

weedgenie

WeedGenie