mcgml Goto Github PK
Name: Matthew S Lyon
Type: User
Company: Wessex Genomics Laboratory Service
Bio: Principal Bioinformatician
Twitter: matt_s_lyon
Location: Salisbury, UK
Matthew S Lyon's Projects
ampliconalignerv2
ampliconrealigner
Tool for realigning soft-clipped bases from amplicon reads
boltimport
VCF Neo4j import tool (WebSocket)
coveragecalculator
cruk
edinburghwgs
framework
Java functions
germlineenrichment
Variant calling pipeline for germline enrichment NGS data
germlinewgs
WGS pipeline
github-actions
gitignore
A collection of useful .gitignore templates
gwasglue
Linking GWAS data to analytical tools in R
gwasvcf
ieugwasr
R interface to the IEU GWAS database API
illuminaqc
Shell script for BCL to uBAM, QC and analysis launch
importtoneo4j
jlst
Joint mean and variance tests
ldsc
LD Score Regression (LDSC)
makevariablefiles
mrcovreg
ngstransfer
phesant-mr-phewas-bmi
primerdatabase
primerdesigner
Design PCR primers around chromosomal targets using Primer3. SNPs and ambiguous alignments are removed.
pybgen
Python module to process BGEN files as dosage data
python-sample-send-mail
send email from Python via Microsoft Graph
quail
A unified framework to estimate genetic effects on the variance of quantitative traits
readmerger
regionannotator
removeampliconduplicates
Removes PCR duplication from amplicon datasets
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