mctavishlab Goto Github PK

assembltree

avesdata

Data deposit for Aves synthetic tree

avestreecode

bio144

Files for BIO144, Phylogenetics

biodiversity_next

chronosynth_api_sandbox

cluster_debug

collab-paper

McTavish Lab collab paper on usage of Phsycraper https://github.com/McTavishLab/physcraper

data-science-research

datelifedocker

Dockerfile to set up DateLife server. I hope.

extensiphy

Pipeline to place taxa in a sequence alignment and phylogeny using NGS reads

extensiphy_fork

Pipeline to place taxa in a sequence alignment and phylogeny using NGS reads

gbif-biodiverse-opentree

Linking data between GBIF, Biodiverse, and Open Tree of Life

germinator

miscellaneous scripts and data for concerns that span more than one of the Open Tree code repositories: integration tests, system statistics, etc.

gradphylo

UC Merced QSB/ES 244

human-application-dplus

jupyter_opentree_tutorials

lichens

mctavishlab.github.io

opentree-ssb2020-site

opentree_helpers

Pull OpenTree helpers out of physcraper for easier install

opentreeclo

Linking data between ebird and open tree

opentreehelpers

Python wrappers for OpenTree Apis

ot2020

Data exploration

peyotl

python library for interacting with Open Tree of Life resources

physcraper

Welcome to Physcraper’s repository! Automatic gene tree updating using the Open Tree of Life.

physcraper_example

physcraper_ms

first physcraper manuscript

physcraperex

Visualization of Physcraper Examples

pyopensci.github.io

This is the website for pyOpenSci. Contributions welcome!!